HL7 Terminology (THO)
5.5.0 - Publication
HL7 Terminology (THO)
5.5.0 - Publication
This page is part of the HL7 Terminology (v5.5.0: Release) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions
| Official URL: http://www.sequenceontology.org | Version: 1.0.0 | |||
| Active as of 2023-12-11 | Responsible: Sequence Ontology | Computable Name: SO | ||
Copyright/Legal: The Sequence Ontology: A tool for the unification of genome annotations. Eilbeck K., Lewis S.E., Mungall C.J., Yandell M., Stein L., Durbin R., Ashburner M. Genome Biology (2005) 6:R44 Please also include the version of SO used. Sequence Ontology data and data products are licensed under the Creative Commons Attribution 4.0 Unported License. |
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“The Sequence Ontology is a set of terms and relationships used to describe the features and attributes of biological sequence. SO includes different kinds of features which can be located on the sequence. Biological features are those which are defined by their disposition to be involved in a biological process.”
“The Sequence Ontologies are provided as a resource to the biological community. They have the following obvious uses:
To provide for a structured controlled vocabulary for the description of primary annotations of nucleic acid sequence, e.g. the annotations shared by a DAS server (BioDAS, Biosapiens DAS), or annotations encoded by GFF3.”
To provide for a structured representation of these annotations within databases. Were genes within model organism databases to be annotated with these terms then it would be possible to query all these databases for, for example, all genes whose transcripts are edited, or trans-spliced, or are bound by a particular protein. One such genomic database is Chado.
To provide a structured controlled vocabulary for the description of mutations at both the sequence and more gross level in the context of genomic databases.”
“The Sequence Ontology is part of OBO. It has close links to other ontology projects such as the RNAO consortium, and the Biosapiens polypeptide features.”
The content can be browsed here
The content can be downloaded here
For information on contributing, please see here
To request a term or register feedback, see here
This Code system is referenced in the content logical definition of the following value sets:
This case-sensitive code system http://www.sequenceontology.org defines codes, but no codes are represented here
History
| Date | Action | Custodian | Author | Comment |
| 2024-03-02 | create | HTA | Jessica Bota | Add Sequence Ontology per HTA; up-488 |
IG © 2020+ HL7 International - Vocabulary Work Group. Package hl7.terminology#5.5.0 based on FHIR 4.0.1. Generated 2024-03-09
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