HL7 Terminology
2.0.0 - Publication

This page is part of the HL7 Terminology (v2.0.0: Release) based on FHIR R4. The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

: Gene Reference Sequence Collection - XML Representation

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<NamingSystem xmlns="http://hl7.org/fhir">
  <id value="v3-refSeq"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><h3>Summary</h3><table class="grid"><tr><td>Defining URL</td><td>http://terminology.hl7.org/NamingSystem/v3-refSeq</td></tr><tr><td>Name</td><td>RefSeq</td></tr><tr><td>Status</td><td>active</td></tr><tr><td>Definition</td><td><div><p>The Reference Sequence (RefSeq) is one of the NCBI projects, the RefSeq collection aims to provide a comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins. ReqSeq is accessible via BLAST, Entrez, and the NCBI FTP site. Information is also available in Entrez Genomes and Entrez Gene, and for some genomes additional information is available in the Map Viewer.</p>
<p>RefSeq entries can be used with the HL7 coded data type. For example, in the HL7 messages specified according to the HL7 V2 Clinical Genomics Fully LOINC-Qualified Genetic Variation Model, RefSeq entries can be used to as the observation values for genomic reference sequence identifiers (LOINC #: 48013-7).</p>
<p>More information may be found at: http://www.ncbi.nlm.nih.gov/RefSeq</p>
<p>Versioning informaiton: The latest release of RefSeq was released on May 13, 2009 with the release number of 35.</p>
<p>RefSeq generates new releases roughly every two months. The dates of the three previous releases were: Release 34, March 12, 2009 Release 33, January 20, 2009 Release 32, November 17, 2008</p>
<p>RefSeq is a free database for the public.</p>
</div></td></tr><tr><td>Publisher</td><td>NCBI</td></tr></table><h3>Identifiers</h3><table class="grid"><tr><td><b>Type</b></td><td><b>Value</b></td><td><b>Preferred</b></td></tr><tr><td>OID</td><td>2.16.840.1.113883.6.280</td><td>true</td></tr><tr><td>URI</td><td>http://www.ncbi.nlm.nih.gov/refseq</td><td>true</td></tr></table></div>
  </text>
  <extension url="http://hl7.org/fhir/tools/StructureDefinition/extension-title">
    <valueString value="Gene Reference Sequence Collection"/>
  </extension>
  <extension
             url="http://hl7.org/fhir/5.0/StructureDefinition/extension-NamingSystem.url">
    <valueUri value="http://terminology.hl7.org/NamingSystem/v3-refSeq"/>
  </extension>
  <extension
             url="http://terminology.hl7.org/StructureDefinition/ext-namingsystem-version">
    <valueString value="2.1.0"/>
  </extension>
  <name value="RefSeq"/>
  <status value="active"/>
  <kind value="codesystem"/>
  <date value="2019-03-20T00:00:00-04:00"/>
  <publisher value="NCBI"/>
  <contact>
    <name
          value="National Center for Biotechnology Information,National Center for Biotechnology Information"/>
  </contact>
  <responsible value="NCBI"/>
  <description
               value="The Reference Sequence (RefSeq) is one of the NCBI projects, the RefSeq collection aims to provide a comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins. ReqSeq is accessible via BLAST, Entrez, and the NCBI FTP site. Information is also available in Entrez Genomes and Entrez Gene, and for some genomes additional information is available in the Map Viewer.

RefSeq entries can be used with the HL7 coded data type. For example, in the HL7 messages specified according to the HL7 V2 Clinical Genomics Fully LOINC-Qualified Genetic Variation Model, RefSeq entries can be used to as the observation values for genomic reference sequence identifiers (LOINC \#: 48013-7).

More information may be found at: http://www.ncbi.nlm.nih.gov/RefSeq

Versioning informaiton: The latest release of RefSeq was released on May 13, 2009 with the release number of 35.

RefSeq generates new releases roughly every two months. The dates of the three previous releases were: Release 34, March 12, 2009 Release 33, January 20, 2009 Release 32, November 17, 2008

RefSeq is a free database for the public."/>
  <uniqueId>
    <type value="oid"/>
    <value value="2.16.840.1.113883.6.280"/>
    <preferred value="true"/>
  </uniqueId>
  <uniqueId>
    <type value="uri"/>
    <value value="http://www.ncbi.nlm.nih.gov/refseq"/>
    <preferred value="true"/>
  </uniqueId>
</NamingSystem>