HL7 Terminology
1.0.0 - Publication

This page is part of the HL7 Terminology (v1.0.0: Release) based on FHIR R4. The current version which supercedes this version is 5.2.0. For a full list of available versions, see the Directory of published versions

Gene Reference Sequence Collection

Summary

Defining URL:http://www.ncbi.nlm.nih.gov/refseq
Version:2.0.0
Name:RefSeq
Title:Gene Reference Sequence Collection
Status:Active
Content:None of the concepts defined by the code system are included in the code system resource
Definition:

The Reference Sequence (RefSeq) is one of the NCBI projects, the RefSeq collection aims to provide a comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins. ReqSeq is accessible via BLAST, Entrez, and the NCBI FTP site. Information is also available in Entrez Genomes and Entrez Gene, and for some genomes additional information is available in the Map Viewer.

RefSeq entries can be used with the HL7 coded data type. For example, in the HL7 messages specified according to the HL7 V2 Clinical Genomics Fully LOINC-Qualified Genetic Variation Model, RefSeq entries can be used to as the observation values for genomic reference sequence identifiers (LOINC #: 48013-7).

More information may be found at: http://www.ncbi.nlm.nih.gov/RefSeq

Versioning informaiton: The latest release of RefSeq was released on May 13, 2009 with the release number of 35.

RefSeq generates new releases roughly every two months. The dates of the three previous releases were: Release 34, March 12, 2009 Release 33, January 20, 2009 Release 32, November 17, 2008

RefSeq is a free database for the public.

Publisher:NCBI
OID:2.16.840.1.113883.6.280 (for OID based terminology systems)
Content Mode:Not Present
Source Resource:XML / JSON / Turtle

This Code system is referenced in the content logical definition of the following value sets:

This CodeSystem is not used here; it may be used elsewhere

Gene Reference Sequence Collection

The Reference Sequence (RefSeq) is one of the NCBI projects, the RefSeq collection aims to provide a comprehensive, integrated, non-redundant, well-annotated set of sequences, including genomic DNA, transcripts, and proteins. ReqSeq is accessible via BLAST, Entrez, and the NCBI FTP site. Information is also available in Entrez Genomes and Entrez Gene, and for some genomes additional information is available in the Map Viewer.

RefSeq entries can be used with the HL7 coded data type. For example, in the HL7 messages specified according to the HL7 V2 Clinical Genomics Fully LOINC-Qualified Genetic Variation Model, RefSeq entries can be used to as the observation values for genomic reference sequence identifiers (LOINC #: 48013-7).

More information may be found at: http://www.ncbi.nlm.nih.gov/RefSeq

Versioning informaiton: The latest release of RefSeq was released on May 13, 2009 with the release number of 35.

RefSeq generates new releases roughly every two months. The dates of the three previous releases were: Release 34, March 12, 2009 Release 33, January 20, 2009 Release 32, November 17, 2008

RefSeq is a free database for the public.

This code system http://www.ncbi.nlm.nih.gov/refseq defines many codes, but they are not represented here